I already had mysql installed running other things along with mangos so I haven't been using his configuration.
I noticed that he included a change for the sql conf in that last patch, so I was curious if the problems were from perhaps not using the sql that he provides.
I'm in the process of building a completely separate server just for CT's repack, since I believe it's the best repack out there and use his distribution of mysql.

And on that note, Happy Thanksgiving everyone, and happy shopping for today and black friday, good deals out there for those looking to build a server =)